Genetic diversity of three European Veratrum species revealed by Amplified Fragment Length Polymorphism
PDF

Keywords

genetic variation
hellebore
jervine
Melanthiaceae
molecular markers

How to Cite

Szeliga, M., Ciura, J., & Tyrka, M. (2017). Genetic diversity of three European Veratrum species revealed by Amplified Fragment Length Polymorphism. Biodiversity: Research and Conservation, 47, 1–8. https://doi.org/10.1515/biorc-2017-0011

Number of views: 18


Number of downloads: 9

Abstract

Chemical and genetic characterization of Veratrum species deposited in European collections is important for genepool preservation and identification of populations with desired metabolic properties. Veratrum album, V. lobelianum and V. nigrum are native to Europe, and in Poland are ranked as rare or threatened. Genetic variation of European Veratrum species was characterized by Amplified Fragment Length Polymorphism (AFLP) markers. The accumulation of jervine as a representative of steroidal alkaloids was measured in seeds. Distribution of 380 markers generated from eight primer combinations was useful for studying genetic relationships among and within species in the Veratrum genus and the most divergent populations were identified. Genetic variation between 12 populations of Veratrum species supports the classification of V. lobelianum as a subspecies of V. album. However, the results need further validation on extended material. A higher genetic diversity (22.3%) was observed between populations of V. nigrum as compared to V. album (14.5%). Contents of jervine allowed for discrimination of the studied Veratrum species and can be used as a potential chemotaxonomic marker. The highest jervine levels were found in V. album. V. nigrum seeds had only trace amounts and no jervine was detected in seeds of V. lobelianum.

https://doi.org/10.1515/biorc-2017-0011
PDF

References

Allen D., Bilz M., Leaman D. J., Miller R. M., Timoshyna A. & Window J. 2014. European Red List of Medicinal Plants. ix+61 pp. Publications Office of the European Union, Luxembourg.

Blears M., De Grandis S., Lee H. & Trevors J. T. 1998. Amplified fragment length polymorphism (AFLP): a review of the procedure and its applications. J Ind Microbiol Biotechnol 21: 99-114. http://dx.doi.org/10.1038/sj.jim.2900537

Chandler C. M. & McDougal O. M. 2014. Medicinal history of North American Veratrum. Phytochem Rev 13: 671-694. http://dx.doi.org/10.1007/s11101-013-9328-y

Felsenstein J. 1989. PHYLIP – Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.

Fiust A., Rapacz M., Wójcik-Jagła M. & Tyrka M. 2015. Development of DArT-based PCR markers for selecting drought-tolerant spring barley. J Appl Genet 56: 299-309. http://dx.doi.org/10.1007/s13353-015-0273-x

Griffin S. R. & Barrett S. C. 2004. Post-glacial history of Trillium grandiforum (Melanthiaceae) in eastern North America: Inferences from phylogeography. Am J Bot 91: 465-473. http://dx.doi.org/10.3732/ajb.91.3.465

Grobosch T., Binscheck T., Martens F. & Lampe D. 2008. Accidental intoxication with Veratrum album. J Anal Toxicol 32: 768-773. http://dx.doi.org/10.1093/jat/32.9.768

Guthridge K. M., Dupal M. P., Kölliker R., Jones E. S., Smith K. F. & Forster J. W. 2001. AFLP analysis of genetic diversity within and between populations of perennial ryegrass (Lolium perenne L.). Euphytica 122: 191-201.

Hammer Ø., Harper D. A. T. & Ryan P. D. 2001. PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontol Electronica 4: 9.

Ivanova A., Serly J., Christov V., Stamboliyska B. & Molnar J. 2011. Alkaloids derived from genus Veratrum and Peganum of Mongolian origin as multidrug resistance inhibitors of cancer cells. Fitoterapia 82: 570-575. http://dx.doi.org/10.1016/j.fitote.2011.01.015

Kato Y., Araki K., Kubota S. & Ohara M. 2008. Development of microsatellite markers in a large perennial herb, Veratrum album subsp. oxysepalum. Mol Ecol Resour 8: 996-997.

Kikuchi R. & Maki M. 2011. Characterization of polymorphic microsatellite markers isolated from the relict perennial Veratrum stamineum var. micranthum Satake (Melanthiaceae). Conserv Genet Resour 3: 507-509. http://dx.doi.org/10.1007/s12686-011-9390-y

Kikuchi R., Jae-Hong P., Takahashi H. & Maki M. 2010. Disjunct distribution of chloroplast DNA haplotypes in the understory perennial Veratrum album ssp. oxysepalum (Melanthiaceae) in Japan as a result of ancient introgression. New Phytol. 188:879-891.

Kikuchi R., Pak J. H., Takahashi H. & Maki M. 2013. Pattern of population genetic structure revealed by nuclear simple sequence repeat markers in the understory perennial Veratrum album ssp. oxysepalum (Melanthiaceae) with a disjunct pattern of chloroplast DNA haplotypes. Biol J Linn Soc 108: 278-293.

Kleijn D. & Steinger T. 2002. Contrasting effects of erazing and hay cutting on the spatial and genetic population structure of Veratrum album, an unpalatable, long-lived, clonal plant species. J Ecol 90: 360-370. http://dx.doi.org/10.1046/j.1365-2745.2001.00676.x

Li D., Baldwin I. T. & Gaquerel E. 2015. Navigating natural variation in herbivory-induced secondary metabolism in coyote tobacco populations using MS/MS structural analysis. Proc Natl Acad Sci 112: 4147-4155.

Li H. J., Jiang Y. & Li P. 2006. Chemistry, bioactivity and geographical diversity of steroidal alkaloids from the Liliaceae family. Nat Prod Rep 23: 735-752.

Li H. T., Wang H., Yang J. B. & Li D. Z. 2011. Genetic diversity of the traditional Chinese medicinal plant Ypsilandra thibetica (Melanthiaceae): Applications for conservation. Biochem Syst Ecol 39: 425-433. http://dx.doi.org/10.1016/j.bse.2011.06.004

Li W., Wang L., Zhao D. & Liu Y. 2012. Steroidal alkaloids from Veratrum nigrum. Chem Nat Compd 48(5): 919-920.

Liao W. J., Yuan Y.M. & Zhang D. Y. 2007. Biogeography and evolution of flower color in Veratrum (Melan-thiaceae) through inference of a phylogeny based on multiple DNA markers. Plant Syst Evol 267: 177-190. http://dx.doi.org/10.1007/s00606-007-0528-z

Llanes A., Bonercarrere V., Capdevielle F., Vidal S. & Luna V. 2011. Genetic diversity in a natural population of the halophytic legume Prosopis strombulifera revealed by AFLP fingerprinting. Bol Soc Argent Bot 46: 305-312.

Lynch M. & Milligan B. G. 1994. Analysis of population genetic structure with RAPD markers. Mol Ecol 3: 91-99. http://dx.doi.org/10.1111/j.1365-294X.1994.tb00109.x

Magdy M., Werner O., McDaniel S. F., Goffinet B. & Ros R.M. 2016. Genomic scanning using AFLP to detect loci under selection in the moss Funaria hygrometrica along a climate gradient in the Sierra Nevada Mountains, Spain. Plant Biol (Stuttg) 18(2): 280-8. doi: 10.1111/plb.12381

Metin Ö. K., Türktaş M., Aslay M. & Kaya E. 2013. Evaluation of the genetic relationship between Fritillaria species from Turkey’s flora using fluorescent-based AFLP. Turk J Biol 37: 273-279.

Milligan B. 1992. Plant DNA isolation. In: A. R. Hoelzel (ed.). Molecular genetic analysis of populations: A practical approach, 59-88 pp. IRL Press, Oxford.

Nei M. 1972. Genetic distance between populations. Am Nat 106: 283-292. http://dx.doi.org/10.1086/282771

Page R. D. M. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.

Pompanon F., Bonin A., Bellemain E. & Taberlet P. 2005. Genotyping errors: causes, consequences and solutions. Nat Rev Genet 6: 847-859.

Pritchard J. K., Stephens M. & Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.

Quagliaro G., Vischi M., Tyrka M. & Olivieri A. M. 2001. Identification of wild and cultivated sunfower for breeding purposes by AFLP markers. J Hered 92: 38-42.

Roldan-Ruiz I., Dendauw J., Van Bockstaele E., Depicker A. & De Loose M. 2000. AFLP markers reveal high polymorphic rates in rye grasses (Lolium spp.). Mol Breed 6: 125-134.

Sarwat M., Das S. & Srivastava P. S. 2008. Analysis of genetic diversity through AFLP, SAMPL, ISSR and RAPD markers in Tribulus terrestris, a medicinal herb. Plant Cell Rep 27: 519-528. http://dx.doi.org/10.1007/s00299-007-0478-5

Schaffner U., Kleijn D., Brown V. & Müller-Schärer H. 2001. Veratrum album L. in montane grasslands: a model system for implementing biological control in land management practices of high biodiversity habitats. Biocontrol News and Information 22: 19-28.

Tang J., Li H. L., Shen Y. H., Jin H. Z., Yan S. K., Liu R. H. & Zhang W. D. 2008a. Antitumor activity of extracts and compounds from the rhizomes of Veratrum dahuricum. Phytother Res 22: 1093-1096. http://dx.doi.org/10.1002/ptr.2463

Tang J., Li H. L., Shen Y. H., Jin H. Z., Yan S. K., Liu R. & Zhang W. D. 2008b. Simultaneous Determination of Six Steroidal Alkaloids of Veratrum dahuricum by HPLC–ELSD and HPLC–MSn. Chromatographia 67: 15-21.

Tang T., Zhong Y., Jian S. & Shi S. 2003. Genetic diversity of Hibiscus tiliaceus (Malvaceae) in China assessed using AFLP markers. Ann Bot 92: 409-414.

Thayer S. P., Di Magliano M. P., Heiser P. W., Nielsen C. M., Roberts D. J., Lauwers G. Y., Qi Y. P., Gysin S., Del Castillo C. F., Yajnik V., Antoniu B., McMahon M., Warshaw A. L. & Hebrok M. 2003. Hedgehog is an early and late mediator of pancreatic cancer tumorigenesis. Nature 425: 851-856. http://dx.doi.org/10.1038/nature02009

Thomas C. M., Vos P., Zabeau M., Jones D. A., Norcott K. A., Chadwick B. P. & Jones J. D. 1995. Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum. Plant J 8: 785-794. http://dx.doi.org/10.1046/j.1365-313X.1995.08050785.x

Treier U. A. & Müller-Schärer H. 2011. Differential effects of historical migration, glaciations, and human impact on the genetic structure and diversity of the mountain pasture weed Veratrum album L. J Biogeogr 38: 1776-1791.

Vekemans X., Beauwens T., Lemaire M. & Roldan-Ruiz I. 2002. Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Mol Ecol 11: 139-151. http://dx.doi.org/10.1046/j.0962-1083.2001.01415.x

Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J. & Kuiper M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414. http://dx.doi.org/10.1093/nar/23.21.4407

Wang L., Zhao D. & Liu Y. 2008. Quality assessment of Veratrum nigrum L. by LC-ELSD fingerprints and LC quantitative analysis. Chromatographia 68: 961-967. http://dx.doi.org/10.1365/s10337-008-0799-8

Yeh F. C. & Boyle T. J. B. 1997. Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg J Bot 129:157.

Zomlefer W. B, Whitten W. M., Williams N. H. & Judd W. S. 2003. An overview of Veratrum (Liliales: Melanthiaceae) and an infrageneric phylogeny based on ITS sequence data. Syst Bot 28: 250-269.